Latest Schedule: (13 July o9 – 7:00 pm) Schedule

Readings: These materials are provided by the professors for you to read before the date indicated. The will be listed here by the date added! (ie newest listings on the top.)

COPIES are now available in the Library (on the bottom of shelf 33A in front of you as you walk in the door). Look up articles according to number. (xx) – If you need an extra copy, please let Kari or me know.

Resources for Phylogenetic Ecology (via Matt Helmus):

• Phylocom - Software for the Analysis of Phylogenetic Community Structure and Character Evolution
• Picante – R tools for integrating phylogenies and ecology

Random Seeding Article (from Kari):

• DoustEtAl2006.pdf

Chai-Shian Kua (for July 24):

• Cannon03.pdf
• ivory_tracking.pdf
• microsat.pdf
• PNAS-2007-Brodie_air_microbe.pdf
• Schlotterer_evolution_mol_markers.pdf

Matt Helmus (supplemental readings) ((hard copies by request)):

• Cadotte_2008_PNAS_Evolutionary_history_and_the_effect_of_biodiversity_on_plant_productivity.pdf
• Cavender-Bares_2006_Ecology_Phylogenetic_structure_of_florida_plant_communities_depends_on_taxonomic_and_spatial_scale.pdf
• Cavender-Bares_AmNat_2004_phylogenetic_overdispersion_in_oaks.pdf
• Diamond_1975_Assembly_of_species_communities.pdf
• Gilbert_2007_PNAS_Phylogenetic_signal_in_plant_pathogen_host_range.pdf
• Gotelli_2000_Ecology_null_models.pdf
• Ives_2006_AmNat_Phylogenetic_analyses_of_trophic_associations.pdf
• Rezende_2007_Nature_Non_random_coextinctions_in_phylogenetically_structured_mutualistic_networks.pdf
• Swenson_2006_Ecology_The_problem_and_promise_of_scale_dependency_in_community_phylogenetics.pdf
• Swenson_2007_Ecology_The_influence_of_spatial_and_size_scale_on_phylogenetic_relatedness_in_tropical_forest_communities.pdf
• Webb_2000.pdf
• Webb_2006_Ecology_PHYLODIVERSITY-DEPENDENT_SEEDLING_MORTALITY,_SIZE_STRUCTURE,_AND_DISEASE_IN_A_BORNEAN_RAIN_FOREST.pdf

Jocelyn Behm:

• XTBG_frog_species_list.pdf

Jeremy Miller (for July 25):

• CoddingtonLevi1991SystematicsEvolutionSpiders.pdf (38)
• ColwellCoddington1994Extrapolation.pdf (37)
• Costello2009OnlinePublication.pdf (36)
• LonginoCollwell1997AntDiversity.pdf (35)

Matt Warren (for July 17):

• JE_Soil_Ecol_2005.pdf (34)

Chai-Shian Kua Resource(s):

• DNA from the beginning (website) (an animated primer on DNA)

Zhu Hua Readings:

• Advances_in_biogeography.pdf (33)
• Biogeography.pdf (32)
• Flora_of_southern_Yunnan.pdf (31)
• Forest_vegetation_of_Xishuangbanna.pdf (30)

Supplemental Readings for Ferry Slik (Previous lectures (paper copies available by request):

• Biodiversity
  • Plot layout: Hirzel & Guisan (2002)
  • Biodiversity modelling Borneo: Slik et al (2009) and Raes et al (2009)
  • Global biodiversity measures: Sodhi et al (2004)
  • Biomass allometric equations: Chave et al. (2005)
• Community Ecology
  • Tropical tree species co-existence: Wright (2002)
  • Latitudinal diversity Neotropics: Weiser et al (2007)
  • Latitudinal diversity and area size: Chown & Gaston (2000)
  • Scale and species richness: Whittaker et al (2001)
  • Latitudinal patterns in Asia: Takyu et al (2005)
  • Latitudinal composition patterns in Asia: Qian et al (2003)
  • Neutral patterns in a Chinese forest dynamics plot: Legendre et al (2009)
  • Phylogenetic relatedness of Bornean trees: Webb (2000)
  • Negative density dependence and phylogenetic diversity of Bornean trees: Webb et al (2006)
  • Trait analysis in tropical forests: Kraft et al (2008)
• Biogeography
  • Biogeographic area network Malesia: Turner et al (2001)
  • East-West divisions Malesiana: Welzen et al (2005)
  • Species area relationships Malesiana: Roos et al (2004)
  • How to go extinct on Krakatau: Whittaker et al (2000)
  • Colonization of Long Island and Motmot: Thornton et al (2001)

Read for ChenJin July 14

• Chen_et_al_Act_Oeco.pdf (29)
• Closing_seed_dispersal_loop.pdf (28)
• directed_dispersal_PNAS.pdf (27)
• ecol-90-11-13-pg129-pg138.pdf(26)
• Fleming_and_Muchela_Biogeo.pdf(25)
• Sawat_and_Chen_JTE.pdf(24)
• Zhou_HP_J_Heredity.pdf (23)

For July 14 Student Roundtable:

• brown04_metabolicecology.pdf (22)
• wright02_speciescoexistence.pdf (21)

Read before Dr. Cao Kunfang (14 July):

• Assessing_generality_of_global_leaf_trait_relationships.pdf (20)
• Reich_et_al_(1998a).pdf (19)
• Hydraulic_architecture_of_trees_and_woody_plant.pdf (18)
• Evolution_of_plant_ecophysiological_traits.pdf (17)
• Readings for students interested in ecophysiology of palms as their independent project:
  
  • A_phylogenetic_analysis_nuclear_genes.pdf (16)
  • A_phylogeneticanalysis_Arecoid.pdf(15)
  • Molecular_phylogenetic_study_Palmae.pdf (14)

Read before Dr. Prasit (18 July):

• WydhayagarnEtAl2009.pdf (13)
• ElliottEtAl2003.pdf (link fixed) (12)
• forest_restoration_fundamental_tools_and_concepts.pdf (11)
• 4_Helping_forests_help_themselves.pdf (10)
• 5_Framework_species_method.pdf (9)

General Readings:

• predicting_future_of_tropical_species_in_a_data_vacuum.pdf (8)
• quantifying_biodiversity_value_tropical_primary_secondary_and_plantationforests.pdf (7)
• phylogenies_and_community_ecology.pdf (6)

Introductory Material

• Hurlbert_1984.pdf (5)
• LandCoverChangeYunnan.pdf (4)
• LULCC_in_Banna.pdf (3)
• tropical_forests_xishuangbanna.pdf (2)
• Xu_Landuse_change_Banna.pdf (1)
• all files in one zip file (1.17 mb)